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Jack R Auty

  • Lab Home Page
  • Research
    • Epidemiological Research into Alzheimer’s Disease and Common Pain Relieving Drugs
    • The inflammatory nature of microplastics
    • Zinc deficiency and Alzheimer’s disease
  • Publications
  • Outreach
  • Tools
  • Web appsWeb apps created by Jack
    • TDP proteomics explorer
    • Ice breaker
    • Exploration of RNAseq and Epidemiological datasets
    • Feedback selector
    • Novel Object Recognition Task Timer
    • Pomodoro timer
    • Power Calculator
    • Power Calculator Cohen’s D
  • R Code
    • A complete guide to ANOVAs in R
    • ANOVAs One-way and two-way
    • Finding an outlier using Cook’s distance
    • Generalized mixed modelling
    • How to make a simple bar graph in R
    • How to make a Rain Cloud Plot (aka a Rotated Violin plot)
    • Mediation analysis with nuisance variables.
    • Multi-level linear model (repeated measure ANOVA)
    • PCA and 3D PCA
    • Power analyses
    • Stepwise Multiple Regression
    • Student t test

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November 21, 2018 / Last updated : February 1, 2023 jackrrivers Tools

Exploration of RNAseq and Epidemiological datasets

Utilizing R statistical software and Shiny R package I’ve developed web apps for the exploration of RNAseq and epidemiological datasets. Not all NSAIDs are the same: Differing effects of pain-relieving drugs on cognitive decline in the Alzheimer’s Disease Neuroimaging Initiative dataset. https://braininflammationgroup-universityofmanchester.shinyapps.io/Rivers-Auty-ADNI/ Citation: Rivers-Auty J, Mather AE, Peters R, Lawrence CB, Brough D (2018) Use […]

June 20, 2018 / Last updated : August 7, 2024 jackrrivers Tools

Power Calculator Cohen’s D

A Cohen’s D is a standardized effect size which is defined as the difference between your two groups measured in standard deviations. Because the Cohen’s D unit is standard deviations, it can be used when you have no pilot data. As a general guide a Cohen’s D of 0.3, 0.5 and 0.8 corresponds to mild, […]

June 18, 2018 / Last updated : August 7, 2024 jackrrivers Tools

Power Calculator

The calculator is for Sidak corrected multiple t-tests. It’s useful for when you have pilot data and have estimates for the mean of the control group and the standard deviations. It allows you to estimate the number of animals required to detect a range of percentage changes from the control group. Example paragraph: A power analysis […]

April 29, 2015 / Last updated : August 7, 2024 jackrrivers Tools

Novel Object Recognition Task Timer

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  • Lab Home Page
  • Research
    • Epidemiological Research into Alzheimer’s Disease and Common Pain Relieving Drugs
    • The inflammatory nature of microplastics
    • Zinc deficiency and Alzheimer’s disease
  • Publications
  • Outreach
  • Tools
  • Web apps
    • TDP proteomics explorer
    • Ice breaker
    • Exploration of RNAseq and Epidemiological datasets
    • Feedback selector
    • Novel Object Recognition Task Timer
    • Pomodoro timer
    • Power Calculator
    • Power Calculator Cohen’s D
  • R Code
    • A complete guide to ANOVAs in R
    • ANOVAs One-way and two-way
    • Finding an outlier using Cook’s distance
    • Generalized mixed modelling
    • How to make a simple bar graph in R
    • How to make a Rain Cloud Plot (aka a Rotated Violin plot)
    • Mediation analysis with nuisance variables.
    • Multi-level linear model (repeated measure ANOVA)
    • PCA and 3D PCA
    • Power analyses
    • Stepwise Multiple Regression
    • Student t test