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The Unsaid Criticisms of Science

Two things that science is struggling with at the moment are reproducibility and translatability. The problem where results are reported by a lab and then other labs struggle to reproduce the same result is happening more and more. Begley et al. (2013) attempted to repeat simple experiments from 53 papers on treating cancer cells in culture. They found that only 6 of the 53 compounds that were reported to kill these cancer cells actually did so. That is, they could only reproduce the results from around 10% of the studies. Translation is a form of reproducibility where a drug that works in animals models of a disease goes on to work in the clinical setting. As discussed in my blog “Why is animal research failing” (jackrrivers.com/?p=289)  the number of drugs which work in animals models that then translate and work in the clinic is around one in every 300. Now scientists like myself have been discussing why science in struggling to have reproducibility and translatability. These discussion are normally done with an argumentative tactic known as the principle of charity.  The principle of charity is a method of engaging in rhetoric where “the goal … is to avoid attributing irrationality, logical fallacies or falsehoods to the others’ statement”(wikipedia). That is to say that we attempt to explain why false or unrepeatable results in science occur without calling anyone a cheat or implying an intentional wrong doing. This is how I have approached the topic with the blogs “Why is animal research failing” (jackrrivers.com/?p=289) , Simple Statistics Provide Poor Prognosis for Science! (jackrrivers.com/?p=299) and Who owns knowledge and how do we know what is known? (jackrrivers.com/?p=251). And yes, research suggests that simple statistical analysis reveals that false results will occur frequently, unintentional biases are undoubtedly causing erroneous reports and positive publication bias means that we only read about the experiments that work and not that millions that don’t. But here’s the problem…. there are cheats out there and here is an example.

www.youtube.com/watch?v=wLlA1w4OZWQ

But the problem is that most cheats don’t report obvious fake photographs, they report fake numbers and when numbers are faked it is nigh on impossible to prove. Furthermore, those who do cheat cleverly have greater opportunities in their career. They will get more publications in more important journals. Their career will soar and as long as they don’t do “an Icarus”, it is unlikely that they will get caught (Icarus example- blogs.nature.com/news/2014/04/acid-bath-stem-cell-scientist-apologizes-and-appeals.html). What do we do about it? Well perhaps for a start…… we talk about it. But it is not that simple. One reason scientist have been using the principle of charity is that it is a very strong method of argument but I believe another reason is that scientists feel that if we start saying out right that many results of science are caused by intentional cheats we undermine the credibility of all of science. We don’t want to punch holes in the hull of the boat we are trying to sail! Given that the anti-vaccine movement is still strong despite vaccines being one of the greatest discoveries of science and that I can still go into any pharmacy in my city and buy homeopathic pills, I completely understand the difficulty in balancing the role of being an ambassador of science and at the same time highlighting science’s very human properties.

Darwin vs Lamarck or Darwin and Lamarck?

I was reading about Jean-Baptiste Lamarck and it dawned on me that perhaps he was partly right about evolution. So, most people believe that Darwin was the first to propose the theory of evolution, but really, evolution just states that the diversity of life is due to inheritance with alteration over a long period of time and this idea had been around a while before Darwin, (some think Lamarck‘s was the first fully described theory of evolution). Darwin just proposed that evolution occurred through natural and sexual selection, and this theory has since been shown to be astronomically likely. Lamarck proposed that evolution occurred because animals changed their phenotype (body) through use (or lack of use) and then handed this change to their off-spring. The example often given is that giraffes stretch their necks as they reach for the highest leaves and over their life-time, through use, their necks get longer; this trait is passed down to their children, who then stretch their necks even more. So on and so forth until over several generations the giraffes’ necks gets as hilariously long as they are today. This is taught in high school in New Zealand as a “how ignorant we used to be” kind of theory. However, this to me sounds very much like epigenetics. Epigenetics is the alteration in phenotype through the turning on and off of genes and these alterations can be inherited. An example would be that children born during or just after the Dutch Famine had an elevated ability to store fats and as a result had very high rates of obesity. This is essentially parents changing their phenotype (body) to conserve and store energy, and then passing this change in phenotype onto their children. This could never result in speciation – so Lamarck‘s theory of evolution is still way off – but it must be noted that the Lamarckian idea of inherited changes based on use is not entirely wrong.

Book Chapters

Jupp, L., J.R. Rivers, and M. Bhatia. 2013. Hydrogen sulfide and substance P in acute pancreatitis. In Adaptation Biology and Medicine. Vol. 7. A.R. Popescu and P.K. Singal, editors. Narosa Publishing House, New Delhi.
http://www.amazon.ca/Adaptation-Biology-Medicine-Vol-Developments/dp/toc/8184872143

Rivers, J.R., and J.C. Ashton. 2012. Neonatal asphyxia and stroke: morbidity, models, consequences, and treatments In Hypoxia: Causes, Types and Management. D.Vordermark, editor. Nova Publishers. 108-130.
https://www.novapublishers.com/catalog/product_info.php?products_id=49272

Three Minute Thesis Competition 2011

The 2011 Three Minute Thesis Competition final was held on Wednesday 31 August in the Dunedin College of Education Auditorium, and was also streamed live online. With the help of only one static slide, nine finalists from across the university had just three minutes each in which to present their doctoral research.

Our panel of judges was chaired by Vice-Chancellor Harlene Hayne, who was assisted by Professor Lyall Hanton from the Department of Chemistry and Associate Professor Paul Hansen from the Department of Economics.

My talk was on medical marijuana earned me the Supreme Award, receiving a $2000 study grant, and airfares and accommodation to represent Otago at the Australasian Three Minute Thesis Competition at the University of Western Australia in Perth, held on 29 September 2011, for which I received the People’s Choice Award.