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Jack R Auty

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    • How to use Rmarkdown
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    • How to make a simple bar graph in R
    • Stepwise Multiple Regression
    • Mediation analysis with nuisance variables.
    • Multi-level linear model (repeated measure ANOVA)
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    • ANOVAs One-way and two-way
    • Finding an outlier using Cook’s distance

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January 9, 2026 / Last updated : February 9, 2026 jackrrivers Outreach

Outreach and public engagement

I am passionate about sharing the wonders of science with others and thrive on the challenge of getting people excited about it. As a researcher, I believe it is my duty to not only lead scientific discovery but also to share that knowledge with the public. Throughout my career, I have been actively involved in […]

July 10, 2025 / Last updated : July 15, 2025 jackrrivers R Code

How to use Rmarkdown

This post is a quick guide to setting up an R Markdown file so everything runs smoothly from the start. It assumes you’ve already installed R, RStudio, and the rmarkdown package. Once that’s done, open RStudio and go to File → New File → R Markdown to create a new document. I’ll share the essential […]

August 1, 2024 / Last updated : August 1, 2024 jackrrivers Uncategorized

CV Builder

July 30, 2024 / Last updated : August 7, 2024 jackrrivers Web apps

Ice breaker

Superficial Get To Know You Questions Get to know you question generator Say “hi” in a unique way What is your name? What course are you doing? What do you want to be when you grow up? Click the button to display a random question: Show Question

July 25, 2023 / Last updated : July 25, 2023 jackrrivers R Code

How to make a Rain Cloud Plot (aka a Rotated Violin plot)

These are great plots. They look good and do not hide any information. They provide quick insights into the data, including its spread, any differences present, and the rough distributions. It is important to choose a graph that matches the statistical test conducted. For instance, if you show mean +/- SEM or SD, you should […]

November 9, 2022 / Last updated : July 18, 2024 jackrrivers R Code

A complete guide to ANOVAs in R

This again is more for my use than anyone else’s. The focus of this post is doing ANOVAs (or linear models, after all everything is a linear model), in a nice readable and publishable way with transformations, post-hocs and graphs. Mostly for appearance reasons, this processes uses lots of packages. Packages should normally be avoided, […]

May 31, 2021 / Last updated : July 6, 2023 jackrrivers Uncategorized

Comments

Clear form-> https://neuroform.nfshost.com/poll/clearpoll <p></p> <p>Quick vote….. choose wisely</p> <p><iframe src=”https://neuroform.nfshost.com/poll/210527″ style=”height: 200px; width: 100%; border: none; overflow: hidden;”></iframe></p> <p>Comment below</p> <p><iframe src=”https://neuroform.nfshost.com/post/210527″ style=”height: 500px; width: 100%; border: none; overflow: hidden;”> &gt;</iframe></p> <p></p>

March 12, 2021 / Last updated : March 12, 2021 jackrrivers Blog

Teaching content

Week 4 Adaptive immune system

February 3, 2021 / Last updated : October 3, 2023 jackrrivers R Code

How to make a simple bar graph in R

OK, I’ll be honest, this post is mostly for me. I always forget how to do all of this and end up spending hours on google. So now I can do what all coders do, copy – paste – adjust. So here we go -> how to do a simple bar chart with SEMs, that looks […]

May 20, 2020 / Last updated : August 6, 2025 jackrrivers R Code

Mediation analysis with nuisance variables.

Mediation Analysis with Nuisance Variables Mediation Analysis with Nuisance Variables Jack Auty 2025-08-06 1 Introduction 2 Load Required Packages 3 Citations 4 Load and Prepare Data 5 Distribution of the dependent and explanatory variables 6 Adjust the data for nuisance variables 7 Standardise explanatory variables 8 Build base models and check assumptions 9 Mediation analysis […]

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  • Lab Home Page
  • Research
  • Outreach and public engagement
  • Journal Articles
  • Tools
  • Web apps
    • TDP proteomics explorer
    • Ice breaker
    • Exploration of RNAseq and Epidemiological datasets
    • Feedback selector
    • Novel Object Recognition Task Timer
    • Pomodoro timer
    • Power Calculator
    • Power Calculator Cohen’s D
  • R Code
    • How to use Rmarkdown
    • A complete guide to ANOVAs in R
    • How to make a Rain Cloud Plot (aka a Rotated Violin plot)
    • Generalized mixed modelling
    • How to make a simple bar graph in R
    • Stepwise Multiple Regression
    • Mediation analysis with nuisance variables.
    • Multi-level linear model (repeated measure ANOVA)
    • PCA and 3D PCA
    • Power analyses
    • Student t test
    • ANOVAs One-way and two-way
    • Finding an outlier using Cook’s distance