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Jack R Auty

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    • Power Calculator Cohen’s D
  • R Code
    • How to use Rmarkdown
    • A complete guide to ANOVAs in R
    • How to make a Rain Cloud Plot (aka a Rotated Violin plot)
    • Generalized mixed modelling
    • How to make a simple bar graph in R
    • Stepwise Multiple Regression
    • Mediation analysis with nuisance variables.
    • Multi-level linear model (repeated measure ANOVA)
    • PCA and 3D PCA
    • Power analyses
    • Student t test
    • ANOVAs One-way and two-way
    • Finding an outlier using Cook’s distance

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May 15, 2020 / Last updated : May 15, 2020 jackrrivers R Code

Stepwise Multiple Regression

Often you have a truck load of potential explanatory variables, that all might interact with each other, giving a multitude of potential ways the explanatory variables could relate to the dependent variable. You could painstakingly create every possible model or you could do a step-wise regression. Step-wise regression automatically adds and subtracts variables from your model and […]

November 13, 2019 / Last updated : March 2, 2021 jackrrivers RESEARCH

The inflammatory nature of microplastics

Plastics are inexpensive, durable, lightweight, versatile material composed of long hydrocarbon chains.­­ These properties have led to widespread use of plastics particularly in single-use packaging. Unfortunately, this has caused a global plastic pollution problem with between 5 and 13 million tonnes of plastic entering our oceans annually. Microplastics are particles of submillimetre plastic. Microplastics have […]

November 13, 2019 / Last updated : January 19, 2023 jackrrivers Online video content

Microplastics and inflammation

My PhD student Bali Lee takes us through some of our research into how microplastics might be contributing to inflammatory disease.

November 13, 2019 / Last updated : August 11, 2024 jackrrivers Online video content

Zinc deficiency is inflammatory but does it effect Alzheimer’s disease?

This video is a summary of my research into how diet might modify the inflammatory response in Alzheimer’s disease and how this could accelerate the disease.

July 2, 2019 / Last updated : January 19, 2023 jackrrivers Online video content

Invited speaker at the House of Lords

A number FBMH academics and students played a central role in a high profile event which took place recently at the House of Lords. The event, arranged by the Division of Development and Alumni Relations (DDAR), brought together over 200 individuals in an effort to engage with a wider pool of alumni and friends and […]

April 26, 2019 / Last updated : January 19, 2023 jackrrivers Online video content

University of Manchester Stories Event. Usain Bolt Shaves His Legs

The organisers invited excellent speakers to tell their stories to inspire the next generation of thinkers. Speakers included Dame Prof. Nancy Rothwell and Chancellor Lemn Sissay. The title of my talk was: Usain Bolt shaves his legs.

February 28, 2019 / Last updated : February 28, 2019 jackrrivers R Code

Statistics example datasets

Lecture four datasets    

November 21, 2018 / Last updated : November 21, 2018 jackrrivers Uncategorized

AAIC 2018

USE OF COMMON PAIN RELIEVING DRUGS CORRELATES WITH ALTERED PROGRESSION OF ALZHEIMER’S DISEASE AND MILD COGNITIVE IMPAIRMENT Jack Rivers-Auty , Alison E. Mather , Ruth Peters , Catherine B. Lawrence , David Brough, Background: Our understanding of the pathophysiological mechanisms of Alzheimer’s disease (AD) remains relatively unclear; however, the role of neuroinflammation as a key […]

November 21, 2018 / Last updated : February 1, 2023 jackrrivers Tools

Exploration of RNAseq and Epidemiological datasets

Utilizing R statistical software and Shiny R package I’ve developed web apps for the exploration of RNAseq and epidemiological datasets. Not all NSAIDs are the same: Differing effects of pain-relieving drugs on cognitive decline in the Alzheimer’s Disease Neuroimaging Initiative dataset. https://braininflammationgroup-universityofmanchester.shinyapps.io/Rivers-Auty-ADNI/ Citation: Rivers-Auty J, Mather AE, Peters R, Lawrence CB, Brough D (2018) Use […]

October 2, 2018 / Last updated : November 13, 2024 jackrrivers R Code

Generalized mixed modelling

Sometimes you know your data can’t follow a normal distribution even after transformation – such as count data or yes/no data. If this is the case, then generalized mixed modelling is the way to go. Basically it’s very similar to general linear modelling which assumes normality of the population distribution, but instead it assumes a […]

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  • Lab Home Page
  • Research
  • Outreach and public engagement
  • Journal Articles
  • Tools
  • Web apps
    • TDP proteomics explorer
    • Ice breaker
    • Exploration of RNAseq and Epidemiological datasets
    • Feedback selector
    • Novel Object Recognition Task Timer
    • Pomodoro timer
    • Power Calculator
    • Power Calculator Cohen’s D
  • R Code
    • How to use Rmarkdown
    • A complete guide to ANOVAs in R
    • How to make a Rain Cloud Plot (aka a Rotated Violin plot)
    • Generalized mixed modelling
    • How to make a simple bar graph in R
    • Stepwise Multiple Regression
    • Mediation analysis with nuisance variables.
    • Multi-level linear model (repeated measure ANOVA)
    • PCA and 3D PCA
    • Power analyses
    • Student t test
    • ANOVAs One-way and two-way
    • Finding an outlier using Cook’s distance